Wednesday
- 29th of May

8:30 - 8:50  Registration
8:50 - 9:00  Welcome
Session I: 9.00 – 12:25. Chair: Pengyu Ren
09:00 - 09:25  Jay Ponder
 Surface Area & Volume in Tinker and their Applications
09:25 - 09:50  Bernard Brooks
 Understanding selectivity in sodium ion channels and an apoCHARMM update
09:50 - 10:15  Michael Schnieders
 Constant-pH Simulations with the Polarizable AMOEBA Force Field
10:15 - 10:40  Valerie Welborn
 User-friendly calculations of electric fields for molecular dynamics analysis
10:40 - 11:10  Break
11:10 - 11:35  Louis Lagardère
 Free energy simulations with Tinker-HP
11:35 - 12:00  Carine Clavaguera
 Vibrational circular dichroism spectroscopy in condensed phases with the AMOEBA force field
12:00 - 12:25  Margaret Blazhynska
 Water-Glycan Interactions Drive the SARS-CoV-2 Spike Dynamics: Insights into Glycan-Gate Control and Camouflage Mechanisms
12:25 - 14:25  Lunch
Session II: 14:25 – 17:50. Chair: Jean-Philip Piquemal
14:25 - 14:50  Frank Jensen
 Ambiguities in Decomposing Molecular Polarizability into Atomic Charge-flow and Induced Dipole Contributions
14:50 - 15:15  Nohad Gresh
 Transferability versus conjugation in flexible anionic molecules
15:15 - 15:40  Giacomo Prampolini
 Joyce3.0: recent advances in QMD-FF development
15:40 - 16:05  Simon Huppert
 Nuclear quantum effects and their consequences for force field development
16:05 16:35  Break
16:35 - 17:00  Elton Oyarzua
 Implementation of the Bond Capacity Model for MD simulations on Tinker-HP
17:00 - 17:25  Sameer Varma
 New developments in AMOEBA-HFC
17:25 - 17:50  Chengwen Liu
 AMOEBA+ Model for Small Molecules and Peptides

 

Thursday - 30th of May

Session III: 9.00 – 12.25. Chair: Jay Ponder
09:00 - 09:25  Jean-Philip Piquemal
 TBA
09:25 - 09:50  Thomas Plé
 FeNNol: an efficient and flexible library for building force-field-enhanced neural networks
09:50 - 10:15  Piero Altoè
 Simulations in the era of AI
10:15 - 10:40  Yanxing Wang
 Incorporation of Neural Network into AMOEBA
10:40 - 11:10  Break
11:10 - 11:35  Teresa Head-Gordon
 Understanding what makes an accurate force field
11:35 - 12:00  Rose Gogal
 Efficient Protein pKa Prediction using AMOEBA in Generalized Kirkwood Implicit Solvent
12:00 - 12:25  Michele Nottoli
 Large scale domain decomposition LPB calculations with the ddX library
12:25 - 14:25  Lunch
Session IV: 14:25 – 17:50. Chair: Filippo Lipparini
14:25 - 14:50  Michele Ceotto
 Semiclassically Approximated Quantum Molecular Dynamics using Force Fields
14:50 - 15:15  G. Andrés Cisneros
 Interfacing QM/GEM via LICHEM, Tinker-HP and Psi4
15:15 - 15:40  Jógvan Magnus H. Olsen
 MiMiC: A Framework for Multiscale Molecular Dynamics Simulations
15:40 - 16:05  Lee-Ping Wang
 Polarizable QM/MM model that combines state-averaged CASSCF and AMOEBA force field for photoreactions in proteins
16:05 16:35  Break
16:35 - 17:00  Patrizia Mazzeo
 Excited-State SCF Dynamics in Complex Systems: Unraveling the Photoactivation of a Blue-Light Using Flavin Photoreceptor
17:00 - 17:25  James Gonzales
 A Highly Parallel Implementation of the Spherical Grid and Treecode Algorithm for Electrostatic Interactions
17:25 - 17:50  Bruno von Bruening
 Distributed Multipoles from Stockholder Density Partitioning: New Developments, Benchmarking, and Machine Learning
Social Dinner, Restaurant “La Clessidra”, h. 20.00

 

Friday - 31st of May

Session V: 9:00 – 12:30. Chair: Laura Milena Pedraza Gonzalez
09:00 - 09:25  Matthieu Montes
 High Performance Molecular Visualization with VTX
09:25 - 09:50  Luc-Henry Jolly
 TBA
09:50 - 10:15  Olivier Adjoua
 Overview of the Tinker-HP Platform: Toward the exascale computation
10:15 - 10:45  Break
10:45 - 12:15  Round table
12:15 - 12:30  Conclusive remarks


Tinker Developers Workshop 2024: New Trends in Modeling
University of Pisa's conference center “Le Benedettine” - Piazza S. Paolo a Ripa D'Arno, 16 - Pisa, Italy
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